NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129297_10014655

Scaffold Ga0129297_10014655


Overview

Basic Information
Taxon OID3300010324 Open in IMG/M
Scaffold IDGa0129297_10014655 Open in IMG/M
Source Dataset NameLake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3855
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameIndonesia: Gulf of Boni
CoordinatesLat. (o)-2.75Long. (o)121.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079543Metagenome115Y
F082076Metagenome113Y
F083517Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0129297_100146551F083517AGGMPPEYIAALKAFAFQDGVSFAEYVRGMVHDHILERGAVFRERGAAFRALSNAGKAWVMAYYERVAVAGALPGKERRAELEKLTWNAVKKAHEFIETEDAAKNAKHRILAIQAIALITRAEEQILLDMDKAEVDEIVKRIEEILNVIDKEAAAGTPKAGKKTEN*
Ga0129297_100146555F082076GAGGMKGTSRRALIEHLLRKHELILVRASSSESRFAALKNLERAEKRFLLSFLTSLGGGVYWLTMELWALNLSDVLTLPIHRIVSMIFGAAITAASVLAILAYLSIGLVIQRAVEIRPRD*
Ga0129297_100146557F079543N/AMGNELARELAAFPFAKLKPLDFRVEIAGMSERELEKRPVKVWIETDDINSVLKIAGFARIIRSYPHLGFVYLETYARELASLVASDLVRSVWNDLPVRADGCVVTEAHPCARALATRAHGRTR*
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