| Basic Information | |
|---|---|
| Taxon OID | 3300010311 Open in IMG/M |
| Scaffold ID | Ga0116254_1005473 Open in IMG/M |
| Source Dataset Name | AD_JPTRca |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9155 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Japan | |||||||
| Coordinates | Lat. (o) | 34.65 | Long. (o) | 135.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F072475 | Metagenome / Metatranscriptome | 121 | N |
| F084407 | Metagenome / Metatranscriptome | 112 | N |
| F092293 | Metagenome / Metatranscriptome | 107 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F103497 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0116254_100547311 | F092293 | GAGG | MTRPPALTDRQIQIIQENLDLFPADILKLPEFTDTDVTRHTIRNYQRRLKNAAVIDEEEVLLTRLKQYINRYGLESRFHGPRGVTGFITHLEKQIDLRAIERDNSENSAV* |
| Ga0116254_100547313 | F103497 | AGGAGG | MAEEPELTPKETRVTRGTKAEGEVSFQSSENAYTAPKITPETARNYFEQNIHLATQIVNLLPQVFPGAPDIYVEDRDLERVDDLSRWIARTAESVGIYPSMKASWIDTMSHGCSVKSAGYVFRNGRYEIDEIRDLPAISFRQPPRTLGMFQAPPNPLMPGVVWDVKEKRVRVFQTLDDTLALHELKNFTIIRDPSTPFPAGRAYCLPAYHIIGAIDHANKAADQQVHRVGAPLIFPQITETITADLKTWGDNFVRTWGKDTGFVIPPGVAFPDVKIRESQTAADRLKLLVSWLEFYFNPTTVLRSGAGTVIGASDSGAMRVWNNFIGGTQAWIEEQYEAFLQPVLTANGYDDLNVRIQLKRPELDRSTVIVEQLRVGIEGRALTREDIRRNLSELDLGELTDEVRAELDATYATAPAMVFENLAGFAPREERIASAAERKIAAANLASLRAIEKILKKGA* |
| Ga0116254_10054734 | F084407 | AGGAGG | MPTSGNVLALLPVLTPYTPTSAQFDLLYPYALDEFKGDDPGCSEAGAERALTYLVAHYLASKDGDVGLQSEKIDDYGYTLSATAARSSRWYAEYQRQIDRCREALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRRDGL* |
| Ga0116254_10054736 | F072475 | GAGG | MSDSFASRFMTPDEKQAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGNKAAYREAKKNPDAVFQYDDQLLALLNRVMKESIAEHHTDNDAARKQHLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSPEEEQNIRRWNGCSP* |
| Ga0116254_10054738 | F094051 | GGAGG | MGNTGILGKVQIEGNWTQKRLILPVIQAALERTQLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSAKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGAVSIHPTLNIPVFISTDIDKLDDTSGNRFVFGVCNATPGVVTVISKIKARQYDDPELGAQVYQYDIWRSPFSNIQQTGGKNLGVMRGYMTES* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |