| Basic Information | |
|---|---|
| Taxon OID | 3300010299 Open in IMG/M |
| Scaffold ID | Ga0129342_1014386 Open in IMG/M |
| Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3297 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 37.5161 | Long. (o) | -76.1223 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F013517 | Metagenome / Metatranscriptome | 270 | Y |
| F041147 | Metagenome / Metatranscriptome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0129342_101438610 | F041147 | N/A | MDTTDKPMDTINQWQDWYRKHRIVAEIDVPLATKDSREQLHDTSKTTTTLDGSNNLLTDYCTAMSFQKAKEYFADTIAEFTNELSGKELYKAFYAAAMDNMDAVEKEYNKAKQLVDMLRCNNVAP* |
| Ga0129342_10143862 | F002738 | N/A | MSIDTYGLSSEQYTEFFHRNVRLAAKLYLDTCTILNEEGVGNIDFKTVLDMYQEAVYTANDDCRRYQKSNNPEALKDGDLYNISPTREEIMEEVQSVNAKVEALTNYIGNLVTVTTTGLEGIATTLDDKVD* |
| Ga0129342_10143863 | F013517 | N/A | MFESLFSAVLPVMKDLLWAAAGILLTYALNKIQSSFQGIPS* |
| Ga0129342_10143865 | F001018 | N/A | MTNQITQAKLKDLNVIKLYEHYAALEKSLPLLTPESQELAKAELESCATLRSEKIDRIYYAMAAHEDALERIKKEGELITQAKRHHESQLKSLKGLLNYLRRVLPLDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCITEEVTTTKRVVLRSMSGEVLSERTEPKTTTKTLPNLDAIRSAYQEGQQLPSGVKVLQEYSVRSKRIFSEPKLDLVSSEYPGELLPEDPSAD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |