NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116204_1027592

Scaffold Ga0116204_1027592


Overview

Basic Information
Taxon OID3300010293 Open in IMG/M
Scaffold IDGa0116204_1027592 Open in IMG/M
Source Dataset NameAnoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2255
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Lake Kivu
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)52
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008304Metagenome / Metatranscriptome335Y
F091429Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0116204_10275924F091429GAGGMASKLNTEFNYRYQVIGETPWAKIETLKGFLVGRKRAAVLEEVSMLKHQAKIEELKNAESLKSLPHVILTLKAEILEAESFLEDSKEAFALNHKEIAILENLLTELYEIANPTRLTYPDGTEYSDNDMLEANAAYEFTMDIARDIQAEIIANGRPSPAKLRNAMSNPITFNTLKQIGFIPENTVRLGCSFDNEMKMLITADDKPILLESTTCDTTQK*
Ga0116204_10275925F008304N/AAAAGYGGDKAIFGYGYGGSSSVSITNLVSNTGVVSSDTAGVGTARHGLGAAGYGGDKAIFGYGYTIAGFSSITNLVSNTGVVSSDTAGVGSVRERLAAAGYGGDKAIFGYGIIGFGVHTSATNRVSNTGVVASDTAGVGTARNSLAAAGYGGDKAIFGYGFTSAGVTSVTNRVSNTGVVASDTAGVGTARFYVAAAGYSFT*
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