Scaffold Ga0136235_1001604

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0136235_1001604

Scaffold Ga0136235_1001604

Overview

Basic Information
Taxon OID	3300010233 Open in IMG/M
Scaffold ID	Ga0136235_1001604 Open in IMG/M
Source Dataset Name	Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Fidelity Systems Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9974
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location
Location Name	Conwy River, Conwy, North Wales, UK
Coordinates	Lat. (^o)	53.2	Long. (^o)	-3.82	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010178	Metagenome / Metatranscriptome	307	Y
F021584	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136235_10016048	F021584	GGAG	MNPATDDQFERQYFSYVLDRVVPASAVQDPNQLQILSDADYEWWWLIASRTSGLLKVMMKEQATGRDFIGTSPQAQAGGAVFNGINIDNWCGTAAGNASFPLAVPYIMPATRVYSLYFTDASAAPNTVELVFSGFKLWPRPSQQ*
Ga0136235_10016049	F010178	GGAG	MSRFSSRYEKRYAHLPVMEEKEIGRPKYVGFRKNPIVAGQLEYLVQPIYDFYGVAVANVVTKQQLFATAIGSAYTPTGGAAFNKTLYHTNLVQNGMLDAPKKFLVKAPATVLRSDTASVDLNAFIGTTLFQLFISGKDYWTSLVSKTPAGAGGFFAGFSTQTLAAGGTVSATSSNGWPSAENFQNLTDPMPQIPGLDPMEPILGQLIEQNQNFAVILDPTITGVVAFTTAAAAPATQLPGSGINAHVYLEGILARAIL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.