NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136235_1000627

Scaffold Ga0136235_1000627


Overview

Basic Information
Taxon OID3300010233 Open in IMG/M
Scaffold IDGa0136235_1000627 Open in IMG/M
Source Dataset NameFilterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFidelity Systems Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18407
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location
Location NameConwy River, Conwy, North Wales, UK
CoordinatesLat. (o)53.2Long. (o)-3.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F003265Metagenome / Metatranscriptome496Y
F009735Metagenome / Metatranscriptome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0136235_100062713F000166AGGMPNIPTPQDALFFAQCVKKWQAILNLQDWRIERGLKPAKQAMASVEFDDAARLATYRLGDFGGEEITPKSLDQTALHELLHVFLHDLLLVTSNPNSSDEELQKQEHRVINLLERLLSKD*
Ga0136235_100062725F009735GGAMTMQTGIVEAVSTKDVTTKFGTKPTYSIKVNGGWVKCGFKNHNANVGDEVEFDGNTGTYGVETKAVVVLRRGAAPAVTSSTPTVAAAAPQAKSFGGYKDKVFPIPALHGDRAIVRQNALARATDLYIAARGGKPFDLESSTLDLVIQFARKFEAYTAGDIDMMEAIQEDETNPLV*
Ga0136235_10006279F003265GGAMKWLVILLISLVFWASAKTSCIITDFYGLSWLGNPSERHQRLSEWLTTNGDSCTSEQLVGSWNNLSSWAGVADSSELRTKVLYYYARAIEREKK*
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