NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136235_1000346

Scaffold Ga0136235_1000346


Overview

Basic Information
Taxon OID3300010233 Open in IMG/M
Scaffold IDGa0136235_1000346 Open in IMG/M
Source Dataset NameFilterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterFidelity Systems Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24979
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (69.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location
Location NameConwy River, Conwy, North Wales, UK
CoordinatesLat. (o)53.2Long. (o)-3.82Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F011648Metagenome / Metatranscriptome288Y
F017467Metagenome240Y
F021938Metagenome / Metatranscriptome216Y
F024503Metagenome205N
F053781Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0136235_100034613F004517AGGAMEHMSRKYKPEDAMLRPHQQSTLEKQQADRIARRKLIANKLKDLDKEVK*
Ga0136235_10003462F021938AGGAGMLCPNCGYSQQSHLETKQTDEEFFLEWWTPTIGEEAAKASWQDKLEMKSREAPMVMPDIEGHISMADGTWVSSRSKHRENLKRNGCIELGNDVPTQQKVHEFSRKEQQERKRQIAEIAYSKLNYR*
Ga0136235_100034622F053781GAGMTPLKLTEEFLILKLFCKMYEDALNRKDYTQMLELSVDIAESGEKLEQMTVDHINGHQT*
Ga0136235_100034624F017467AGAAGLKNNSDNYLVEWYIAVAKKRGWPAVVKLLAQYPEKEERIKQLIKKKLGK*
Ga0136235_100034629F011648AGGAGMSEQDQDLHSFQQHLERIFKDLEEGVFITEDEIGDLRYACGLPSPVRNTQVNPVLRDAINDFGKVFGIQSFPTIWSKK*
Ga0136235_100034634F024503GGAMKYLLLLTPFVLAACTSFDPPNVSLETDKQAFHMSRAQVILGITECEDAGTRPVVITAKRRINGTMSDVPVEVTCNPRYKIFH*
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