Scaffold Ga0136236_1003136

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136236_1003136

Scaffold Ga0136236_1003136

Overview

Basic Information
Taxon OID	3300010230 Open in IMG/M
Scaffold ID	Ga0136236_1003136 Open in IMG/M
Source Dataset Name	Filterable freshwater microbial communities from Conwy River, North Wales, UK. Not filtered control. After WGA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Fidelity Systems Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2028
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Filterable Freshwater Microbial Communities From Conwy River, North Wales, Uk

Source Dataset Sampling Location
Location Name	Conwy River, Conwy, North Wales, UK
Coordinates	Lat. (^o)	53.2	Long. (^o)	-3.82	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F018879	Metagenome / Metatranscriptome	232	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136236_10031361	F018879	N/A	NYTYQIDDSWVMDQTGADNTSALFLNPDVIQWGSLRELGPNNEVFSSADASLDQYIMEGTLIVRNPAGVAVLAAISPTGAAVTTPRPTXXXQVKRYLA*
Ga0136236_10031362	F000857	GGAG	MDDDIKVNEEYYSKGILEAGVDGVFRHNDKLFNEVKSGTWSQTFKTPNIEYKVGAVDGVRYVQYDQKNVEEVKQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSKWFANRPWELIKQDREDKILFYAIVNEYYSDFVCHPSGKIPIPYNPSIPTK*

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