| Basic Information | |
|---|---|
| Taxon OID | 3300010160 Open in IMG/M |
| Scaffold ID | Ga0114967_10058991 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2377 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F022872 | Metagenome | 212 | Y |
| F031793 | Metagenome / Metatranscriptome | 181 | Y |
| F083794 | Metagenome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114967_100589912 | F083794 | N/A | MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQAEKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPAPAIAVNNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGSSDYESL* |
| Ga0114967_100589913 | F022872 | N/A | MSWQIPTQIEQDIIAGKAQYRSFQTGVGGQSILPVPPSAYAVVFGYDFSPAGGGIQQKTEVTDLLELSNASIRFFETQQISFYTGTDFFPFIHHVNSEISAFYSDDSGAAEYVITIDNSPIARQVYITSDKDITISVGLILDSDVATTGAIPVTSRTPALMTYGGSAQTPAVQTDFGPAATPLQFMQPSPKDFQDFGFGLLPNNANGQAFATPDPARGLLDPSVHLTSLGVTFRDAAAANYFLCLHYALYTKTIPEQRG* |
| Ga0114967_100589914 | F000710 | N/A | MDISYRQGIRSKGFAITCPTGTTQQTLTLSGLAKSFEGLLITSAFTATPGVVINPKQLRITLTINNDVCIEDDAALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNPAASQNVDVTVWYRNEL* |
| Ga0114967_100589915 | F031793 | N/A | MESVVIKNIYLTQFTTAGIMQTFGGAGGGFNFQQTLSIIVGNQQVVKNLPIQFNQGVNGQAFDRLHTNAGAGFFGTPSRLEQSVQPCEIRLLTDIVIPPQVSFEVRIDSTNAAYGTGVVVCALSGYGKIFSAGNSF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |