Scaffold Ga0114967_10048818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114967_10048818

Scaffold Ga0114967_10048818

Overview

Basic Information
Taxon OID	3300010160 Open in IMG/M
Scaffold ID	Ga0114967_10048818 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2685
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031492	Metagenome	182	Y
F048305	Metagenome	148	N
F049615	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114967_100488183	F049615	AGGAG	MTPDTVNLIAELEQRVSELSTALELVTEDRDNLRDAGNSLMTELDLCRATLTQAHSDISRLRVYLAQGAEL*
Ga0114967_100488184	F048305	AGG	MGMSDYDLHIKGQDFRIAELISETAMEQLAARKAQIEIAELCVEVARLNSHIQTLETTLAAMSGELHALRMDTQ*
Ga0114967_100488185	F031492	GGA	MTQFNVGDKVILDEISGVIESIFMVDGKETTYDVRYTSMDIMIATDVPEEDIQHWQADEQ

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