NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114960_10024046

Scaffold Ga0114960_10024046


Overview

Basic Information
Taxon OID3300010158 Open in IMG/M
Scaffold IDGa0114960_10024046 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3886
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F030333Metagenome185Y
F032569Metagenome179Y
F040990Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0114960_100240461F032569GAGMGFGLCLVYVEVGMIRVNVMENGFNRAFWNAKRTLPVKHLETPRQYGQRCREAFRYRVDPSSPPGKFGTVYYIFDQDEDYTWFMLRWG*
Ga0114960_100240463F040990N/AMNYYYEIDPKYDGTIFGDKWRYWCMYNCSPADNGNMCFGTHDEFVSRSSRVWLENRNGVYQVHPKWHGHRRVDPHEFTIVKLKAKTIKWWHDEE*
Ga0114960_100240464F015302GGTGGMKNEYYSNTAARLDTIIGGDTQHFLRLQRVKNEYDTLAREVPIGQGFLTFDDYVREYYGIKLEFDGDNVSLAYSVVNEKKYTMFLLKFNR*
Ga0114960_100240466F030333N/AMAIDRNPRLTIPVKTYTHYTECEPWCLSNIGEWNEDWWKDFPDIAMSVIVEGPHEDCYWFHNEKDALMFRLKFR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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