NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114964_10000555

Scaffold Ga0114964_10000555


Overview

Basic Information
Taxon OID3300010157 Open in IMG/M
Scaffold IDGa0114964_10000555 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28822
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (68.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013870Metagenome / Metatranscriptome267Y
F027400Metagenome / Metatranscriptome194Y
F033799Metagenome176Y
F039483Metagenome / Metatranscriptome163Y
F091345Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0114964_1000055528F027400AGGAMTNSELKQKLEQAQELLSDVYHWASTPMTNGLQVLPLSTNSEIESLMSVADGCISDALSELEDV*
Ga0114964_1000055531F033799AGGAMNRNFIVICTECSEEHDMNSIKFLNVEEDIQGRDIMHFECPVTKLEARSLVYAE*
Ga0114964_1000055548F091345N/AMKTMQQQETEAILSMVELIKTLEQKLADAKARIEELENKQPSNFVNLKNHYE*
Ga0114964_1000055552F039483AGGMSNELDALSGVETPSLTNFWKWVKKTFTISYQDEISHYLNQSVDFVDYENRVRTLQRRGMI*
Ga0114964_1000055581F013870GGAMSNELKKECGLGMYWCNTDNKCKPIQEDAPVNAVGGGQIAGVGVGPKGEPGINKKKGITSFISFIRRKKPQ*
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