NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098047_10006629

Scaffold Ga0098047_10006629


Overview

Basic Information
Taxon OID3300010155 Open in IMG/M
Scaffold IDGa0098047_10006629 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4722
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.201Alt. (m)Depth (m)170
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033811Metagenome / Metatranscriptome176N
F068777Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0098047_100066291F068777N/AMILDNSHSNEIVYDRPDSYFDKKKIEKECGSIENWYAQNLRFISTNYNIASNIDEVKNEGKRSAKRWAESSPVDQIINNYRYFMGTQENFNFAYLTEDDKGGELPAPYVKGEQIFELIEYMRGGIRKVLNSTKIAIESLEPSKISKKMEKVQMIKLKRDLAEFFNNAQEKYGMGFFPEGIGNNVDMDEAVEKVMKSPIDEMEEYGLDLLNDIVNRNRLKDQMMRAFTDCAVGRYCGVYVDEMHGRPYTEIIPPYNLIVDF
Ga0098047_100066296F033811N/ASLSSCVFKLKTVPGVIHRKLFCNIAVMDANIVQAFIEAIDYSHVKHIIRSNKGIKAHWGGITPSISDLKRVIMNMWARVSKHESAEDCVNGIVMIKDGKKVRIDFLYLSYSSQMEESSQCSEEDRPQDSEREIEPS*
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