NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098059_1044731

Scaffold Ga0098059_1044731


Overview

Basic Information
Taxon OID3300010153 Open in IMG/M
Scaffold IDGa0098059_1044731 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1785
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014329Metagenome / Metatranscriptome264Y
F027811Metagenome193Y
F029432Metagenome188Y
F089528Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0098059_10447312F014329N/AMRDYSITRRKSEWYHAKVTDSFGSEFNNYFEHAHEANDWIYYIWENEKPPLTHEEEMVLLANAIWGCAKLDEELGLLKGNEDNLD*
Ga0098059_10447313F029432GAGVVKQKIKIMMKYPKIVGWSIVITMWTSCGVGLNYIQTQEQGNDEIVNTAESMIEWIGHDLESGKIDSTIADTYIVNLEEIITDSRK*
Ga0098059_10447314F027811N/AMGEFRNKRWYEMEYQENELREMISNLRIVKTFASRLVDEDELRLTKFELLLENYTNNKYKEIDEWLNKKLKL*
Ga0098059_10447315F089528N/AMYEALKHWKEYQEKKKALQELDKFINKLVVKNGITKY*
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