NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0098043_1000038

Scaffold Ga0098043_1000038


Overview

Basic Information
Taxon OID3300010148 Open in IMG/M
Scaffold IDGa0098043_1000038 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37274
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (32.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005287Metagenome / Metatranscriptome406Y
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y
F039679Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0098043_100003837F039679N/AMSAKNSHLTIRKDLVGEDLSVPVRFLDYQEESWITDSDTLNIDQEYIPENGEQLDDISGYNMIIKITDPNQKDKYGDLWEERLAFAISADFDWN*
Ga0098043_100003839F007770N/AMSGEGLSVSFRRTKSTTKSNQELLREFQRIIYASRVTTHMKWYGEAHSVDILEHGDNNRPKFQQEYVAIKDTFQFEISVYESWYQDADLYESHKREDSFVSFARKFAEDNNLMYFPDGFPAEWIEQEIIDEQKNWNHYNVKPDDKNIDKICDVWYKYGMKKLQNDSEELWYNARDEIKQLMETKEYAH*
Ga0098043_100003845F016956AGAAGGMIDTIETWKAPKEVALAIIDLALTHIKKVELNPEIKTEGDNFDYWNSYDLGDGNYVDYNIHCGDEWCVVKQDGSGEYEYTDPSTWSWDVCAYAVDPPTKDNPYHSIDTSREHYLFSYNKSYGKKEVVFED*
Ga0098043_100003869F005287N/AMEIKSSQIVYSEHDYDECFEYTDGSGRVSEGNAVGIVSEDGKSLTLFSDIVYSKYDHDYWNNLELENDVDRLILP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.