| Basic Information | |
|---|---|
| Taxon OID | 3300010147 Open in IMG/M |
| Scaffold ID | Ga0126319_1604640 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1840 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Big Basin, California | |||||||
| Coordinates | Lat. (o) | 37.1932 | Long. (o) | -122.2204 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002111 | Metagenome / Metatranscriptome | 592 | Y |
| F008327 | Metagenome / Metatranscriptome | 335 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126319_16046401 | F002111 | AGAAG | MVTSESYATTGPLPFVSYSTMAEARIPESVWPVVYPALQALKGHTQEYPGCQRMDVFVRAAPDAVLVHCYTTWDTPSQLEAFLERGYTFERMLADL |
| Ga0126319_16046402 | F008327 | N/A | MPSGDSPAVAKQFYLYLQGQHQTDYRVQTWHVDWMSLAWLWGFVIVIVIGLLLWVWQYRTTRQRTGIYPVDSFGGSTTELAGPSTFWFLLLTLFLTLFAVAIIVGHLVFGQKF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |