NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127450_1029787

Scaffold Ga0127450_1029787


Overview

Basic Information
Taxon OID3300010099 Open in IMG/M
Scaffold IDGa0127450_1029787 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000329Metagenome / Metatranscriptome1287Y
F000338Metagenome / Metatranscriptome1271Y
F001127Metagenome / Metatranscriptome769Y

Sequences

Protein IDFamilyRBSSequence
Ga0127450_10297872F001127GAGGMDMYIEQYQAKQGGVTLHTWTDVQGCKKENFYITGVSGTPVAPWFRAVLRTKHLADIAVFPSSPSAGSS*
Ga0127450_10297874F000329GGAGMESKAMVAAQESWPVSGASLPVGEPVTLVIEEERFFGWVAPEAQAHSIVCVAIEFTRGGTRVQERIPVENIQRLRDYLQAHPELRQAKEKGA*
Ga0127450_10297875F000338AGGAGGMASVRFADMQSRPVEFLDFMSLTLDEFQQLVPPFEAAFQAHMAAWRL
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