Scaffold Ga0126311_10016459

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126311_10016459

Scaffold Ga0126311_10016459

Overview

Basic Information
Taxon OID	3300010045 Open in IMG/M
Scaffold ID	Ga0126311_10016459 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4285
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8712	Long. (^o)	-122.4276	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004025	Metagenome / Metatranscriptome	456	Y
F015224	Metagenome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126311_100164592	F015224	GAG	MYIVAFRLIPFPIILDETEAGRPHEYINFDLDAERKVRKQMEEWQFFRVADKPSQADFIFLVSLDESSIEGLAIPFEAYRQHFKEKFDLDALRDAAFGRYAIGPLKLPTLSRLSDRLVKQLRERLAKPGP*
Ga0126311_100164594	F004025	N/A	LLLVCSAALGQQTPSQPQSLTFYYDYTVRPGQEEEFMTLVKTVGAPVRDKLMADGVVLAWGIDTPVLRYPGGTTHLIWFSVANWSGVEKVLRAMEAQLQKLAAEDAKRTESAHASKQKPSITTAERQAAVFDMSKTRDWLARDLIANYGSPPAAGVLPVTRYNFIKVKPGKTAEYRRTWEKYNKPVFDKLIADGALLAYGFSTEEVKTDGDFTHFVWMAAADMSGMDKIAAAFAADRARRTDEEQSSIAELFASVTEPDKARSVVTRSRIFRLPPAK*

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