NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126304_10294061

Scaffold Ga0126304_10294061


Overview

Basic Information
Taxon OID3300010037 Open in IMG/M
Scaffold IDGa0126304_10294061 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010545Metagenome / Metatranscriptome302Y
F010874Metagenome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0126304_102940611F010545N/AMSFLDRFRKHTEDEVSRIARLSKTGRMVDGKIIDAVSDDDGRILEVSYTYELAGVQYESSQPLSDLQQQRPNDYAPGNQIV
Ga0126304_102940612F010874N/APKPARELPSYGRALVLAVSGSLVVLVFITQTLMAFVQRSDGYGFWHWVAAGETAAWRLKWIATPVLFAILWFGRKLYRSILLQPERFCGVKYARHGLLASSVITLLIALLIGITVPARMEQRRLSKEAAIRAQGYAIELALTQYKIKYKAYPADLRSLLDRIPDPDGTLAAALLNIHPLAYKPSVDVATNASEKKARPQRGSVIRTVGFSPADSDDTPSGGLSYTNYALVLPGEDNITGNEDDWIIRDGMIMKQSEIANGGVGRSVSAGVLKP*
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