NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0130016_10000094

Scaffold Ga0130016_10000094


Overview

Basic Information
Taxon OID3300009868 Open in IMG/M
Scaffold IDGa0130016_10000094 Open in IMG/M
Source Dataset NameActivated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Novogene Bioinformatics Technology Co., Ltd
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)193899
Total Scaffold Genes203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (58.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater → Activated Sludge Microbial Community In Wastewater Treatment Plant From Tai Wan

Source Dataset Sampling Location
Location NameTaiwan
CoordinatesLat. (o)25.0Long. (o)121.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018484Metagenome / Metatranscriptome235Y
F024585Metagenome / Metatranscriptome205Y
F053283Metagenome / Metatranscriptome141N
F066275Metagenome127Y
F067789Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0130016_10000094101F024585GAGGMTEHGWTVSPPAAAVPGTYCLSCASALRMLDWFVKCVDCGAVVDSETEAERQRWRFHPDELGQLQPHCGLCSAGRL*
Ga0130016_10000094120F018484GGGGGMVVALAAALVPAASAKGRITVRLGDSTPRVGQAFTVDIRTDYVVPADDWLRLIAVAPGKSWYDVVGTVTGASSRATATTPRDGFEVKLRRAGPTRWRGVVSLPRPGRWRLVVPNGTHVGFMVPPPASWMPWVTVRP*
Ga0130016_10000094187F067789N/AVDTVISLLELFLYIAAILALSMSVTWAVVKISPSESAKEQRGRTDAKAKS*
Ga0130016_1000009486F066275AGGAMVEAHFAEIEKTLLYISEARQRAEKTIRELKRIDAPAHLVAAVVEAERALDDVARRLTQETYFAIPSEQLAIDTPADELTIH*
Ga0130016_1000009498F053283N/AMEAAVESTPADASARTLHLLRDCLALGRPDHGRAPAKVRLEETLGPELTRRLLSSLGATESG*
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