| Basic Information | |
|---|---|
| Taxon OID | 3300009840 Open in IMG/M |
| Scaffold ID | Ga0126313_10075191 Open in IMG/M |
| Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2437 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
| Coordinates | Lat. (o) | 38.8722 | Long. (o) | -122.4269 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000651 | Metagenome / Metatranscriptome | 959 | Y |
| F000756 | Metagenome / Metatranscriptome | 905 | Y |
| F004101 | Metagenome / Metatranscriptome | 453 | Y |
| F016525 | Metagenome / Metatranscriptome | 246 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126313_100751911 | F000651 | AGGAG | VYEPITVEIDRGYSEGDYRSYSINFIGRLIRIVEAGQTTMRLYEWSDRGRLMYLVYIEEDNPGRTLRRTLYPFINTHCAGATPRKGYTAEEVSRAYPEFAAGKFLGLTRNSR* |
| Ga0126313_100751912 | F004101 | GGA | MLAVLGYNGVVGYLITGAAGEAGANLTDSEWRALVYVASQHHFSAPHLRLEEGEEALEVEADDVEGLRSALGKALEARDPEQISTPNGELYYATIQRVRHVLRSKGVRLARTSA* |
| Ga0126313_100751913 | F000756 | AGGAGG | MTDREEPSGAEGKIPEAWIGQEVMLETTEALSSDLRAAAPVYLEDVNERGIVMVVTRHKDQSQFSRYFYPWSVVGWIRLAEEDERSEPRAGGS* |
| Ga0126313_100751915 | F016525 | GGA | MRKERRELELRKEGQLAELLGEALAGEPSAELRRLAFEDQRQAEEGLVALTSNGKVYYKLVEELIEGDMAARIAAIRSRETWLKERRDRWRDYGGHPR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |