NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116156_10037638

Scaffold Ga0116156_10037638


Overview

Basic Information
Taxon OID3300009780 Open in IMG/M
Scaffold IDGa0116156_10037638 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3205
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)40.12Long. (o)-87.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092110Metagenome / Metatranscriptome107Y
F103501Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0116156_100376382F092110N/AMSCKDYIDLKPGMEVKLSYEPWGYKNVDAVIDSVDVEYHYDEAHNCGVFHPAVVCYVGKYRMTFKGSINWETLVIKPCRKVQVKDLRVGDVIENSVWRGFVEKVFSDKYVGVQWFDKLNNPTSYYNYSSNEMIDVEVVGHVDLWNL*
Ga0116156_100376389F103501GAGGMIKNIVLEGVVSYDDEYDLWCVGEDYIENIISDFEDKKVLVTITVI*

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