NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105164_10001260

Scaffold Ga0105164_10001260


Overview

Basic Information
Taxon OID3300009777 Open in IMG/M
Scaffold IDGa0105164_10001260 Open in IMG/M
Source Dataset NameWastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16337
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameNetherlands
CoordinatesLat. (o)52.2278Long. (o)5.919Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022510Metagenome / Metatranscriptome214Y
F043144Metagenome / Metatranscriptome157Y
F069903Metagenome123Y
F085792Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0105164_100012601F085792AGAAGMLGETALETINEEKKKVGKTTLVILTMAFAHTVFYLGPTLYLPLGLDDLFLLGYALVLADSSLVVFLGI
Ga0105164_1000126016F043144AGGAGGMNIVSKIKVASGKLSVAWTSFVLRYPRVYLVATALVGMVSLILFFAPEASAQLETQVTDALNPLARLLVGPIAKGLAVIGLFAFVGLPYAGRWMMAVSSLVAAVILGLLANIVTAIFQGSTASSFTLG*
Ga0105164_100012602F069903AGGMPRKRITLSLDTDIPSDKAIFDFLAGLPRRTRSEIIKEILFDALEKRDESREPDSPTSTAASDPAGIDADEIIEKLF*
Ga0105164_100012605F022510GAGMALPRSILKQLWEAGYGGKVIRVPVKNERLRLKVIADEILGEAEGLYESKATTFVLERRGRSGFYRCFGALRLCRRFHLSVEEARRVRRRAYSRWNHWMRECEVKILQFAEKFGEGGEGRRRYLDLRKRVREGQEVDGSIGELLEMARVSVRSVTWS*
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