NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116162_10121030

Scaffold Ga0116162_10121030


Overview

Basic Information
Taxon OID3300009772 Open in IMG/M
Scaffold IDGa0116162_10121030 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC105_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → unclassified Corynebacteriales → Corynebacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049656Metagenome / Metatranscriptome146Y
F067768Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0116162_101210301F067768GAGGMNILENEQVQAALIALIVIGLNALAQWVRSQVSFKKIVDEYWCYVQPLAEQVRAEVVKSLQGGALSTTVMGAIVQKAVAQWADSFRLNEGKEPTKTQIAAIESELVDVAERAIGGK*
Ga0116162_101210302F049656GGGGGMDNIDRYEILDEPDQRGYVMVKRVADGKLAPCKAEWLKPAPHSESPTHVMPRSRTKALRMAMLDWE*

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