Scaffold Ga0116162_10099878

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116162_10099878

Scaffold Ga0116162_10099878

Overview

Basic Information
Taxon OID	3300009772 Open in IMG/M
Scaffold ID	Ga0116162_10099878 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC105_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1324
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Hong Kong
Coordinates	Lat. (^o)	22.28	Long. (^o)	114.17	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036594	Metagenome / Metatranscriptome	169	N
F051104	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116162_100998783	F051104	AGGAG	LFELRIAEAIEEEAVLSQDLIQEGFSHAFKAGELLQEVKSMLPSEEDLEQWVEQNCSKVEKGVASSCLRLFNGETVKVEATHKREENHKRERG*
Ga0116162_100998784	F036594	N/A	LSNSQQEFCVYDKLEEMRERNIETRGLPPTMRFEHRLLNKQKIQNVYGMSKVGELFKGGYEVVKEKQVESWKASLFNFTTEEFVLLGSKQLEQEMKKFKEKFPTGWFSRFLKAYGAYYLASHAGKEVVIEALKNAEAERTMIWRAVQIFEEAERELLVLKQEEGSKKTLGALYEELRRKVCLN*

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