NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116191_1000020

Scaffold Ga0116191_1000020


Overview

Basic Information
Taxon OID3300009716 Open in IMG/M
Scaffold IDGa0116191_1000020 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC111_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151253
Total Scaffold Genes199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (6.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002779Metagenome / Metatranscriptome530Y
F006895Metagenome / Metatranscriptome362Y
F087203Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0116191_1000020172F006895N/AMIGDRFNFEDVFFRDLTICVLDTLEGQVKWVNRFSSGDKFVEVPFYYSMTGDERFLLDSFTDDIVSGDSSGNGRYVELNTDIIPRGHVTLKSFAIRSDEFANPNVWLRTVVENETEIRKVLGRIRAIPVTVSYDLVITLASEIDSFKCSQAVMDTLWLYKFMYFEHNFMNIDAVILMPDSNNIEITRDKNLTSDNTIKMTVSFEVQTYYPAFRKDRADFPGYTKENSGMSDLNGYALEGGYSDFFSQPGVSNEGFFVTPKRTKWFNNILRARERSSRRYDNPNGDLGNKNND*
Ga0116191_1000020173F002779N/AMKNLKLELFNFKKDLSFEQEEISVIIEGHLNATNQYSEKTIITSLNEKLKPYTYDKSVKSLLEDLNNDMAQFELLYELKNLYGVLNTKNQGELYRQPINVLLQTINLETDQDRMSKILNELAVYDWVPEIKVFVHNLTKSPEKRSNLLSGGSAESIFTVVEQVEEGHIALVKDSWFLLTENSIEKTLLENHVKDAQALQSLRLLETAMKYSSVSEDRINFRISEYLTIGLSVGNKGGLYINDDELNSETTLESLFNSPIVPIVNKNFYPILLETSKNLDKFVELDVVKRVNNLVNPYLELFAFNYKNNTFVYRCDERYGNSFFKYESALELVNEVRNELNYDLTYFFENKLNKELVVKRKLEDKEREITLKLEDVQFNIDKIKGSLQMIGESEVLTTALANLEKRKTSLGSELLAVKELQYKERIKA*
Ga0116191_1000020183F087203N/AMILSREINVKITESNYNYYDNLGYDVYISEQIIIPVELLPKGSHYKIKCKCDDCGIEKDVIYKNYLKYDNKWGDYYCRKCSEKKRKETLRKNYGVDYPIQNKGVLEKMKNTLVSKYGVDNISKNKKNDNEKIKRE*
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