NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116166_1028740

Scaffold Ga0116166_1028740


Overview

Basic Information
Taxon OID3300009711 Open in IMG/M
Scaffold IDGa0116166_1028740 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2729
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072892Metagenome121N
F076577Metagenome118N
F096294Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0116166_10287402F096294AGGAGGMVSEEIPGKIGEHQDDEYIFKVANSAEDLSDCRIITKKQYEAELREAYFAGWEDRNDCELREIIHKRKATREEYFKWFIEEKKRVEPKVIFDDDDGQPD*
Ga0116166_10287407F072892GGAGGMDINLLKTIVTRLFGLYSQFKSIVSDLETNNTLDNQEWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKVDGIIDAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEENVLAGT*
Ga0116166_10287408F076577AGGAGGMFWPERKVIALMEIAFHYGCLYARKHTGKKRNDLWLAFKIDKLANNLKYINPDPRCTHPVNLDVLDHCWGYAHKIDKGEEIDMNELCNGCEFLSVEVKNEQVAPH*
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