| Basic Information | |
|---|---|
| Taxon OID | 3300009686 Open in IMG/M |
| Scaffold ID | Ga0123338_10001883 Open in IMG/M |
| Source Dataset Name | Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - groundupSSSS metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19867 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (52.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Borup Fiord, Nunavut, Canada | |||||||
| Coordinates | Lat. (o) | 81.017 | Long. (o) | -81.583 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004608 | Metagenome / Metatranscriptome | 431 | Y |
| F006155 | Metagenome / Metatranscriptome | 380 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0123338_1000188315 | F004608 | GGAG | MHTSFDQTLPQPSRWDQEGAEYVRSNIDWCARCSKRLVGLNPGLTAEHALDLAHEMSLDDNLRAKSPEAVAEGLHEIDLRTDA* |
| Ga0123338_100018837 | F006155 | GGA | MEFDVTREQWVERFAMHLSQLEVGAEPADFATLAQRLFATHGHLDPVMAADDEFATRLQAGSRTGAVAHDPEAESRFERTERIPVERLMTAGEYVRDTDEWIARCLARVLELDPIIKADEARRSVTELAELERWRLMKPEAAAEQLYTPIRPGR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |