NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114958_10008362

Scaffold Ga0114958_10008362


Overview

Basic Information
Taxon OID3300009684 Open in IMG/M
Scaffold IDGa0114958_10008362 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6646
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010247Metagenome / Metatranscriptome306Y
F013525Metagenome / Metatranscriptome270Y
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0114958_1000836211F010247AGGAGMNVQGVVKYVYDNRLTKDGTPNKFPNFKFKVNDQEIVLWSAIKPIFLEKGKKVSVTCQASKKNGSLFVQSKEDKSPMIQELPADNKPDTSFNPEELEKELANVAKDFDADLRIETKKPINKDEYMFVMALAKSAIESGKINVNKEEIDLLIKDLKFLFQMNFHN*
Ga0114958_100083626F032656N/AMDNQFYLITYAISFVKVNDENIREDIAHVRFFDNSNFTNSSSFLASLKQVKKLRITGVEFDVEECDWFDYYEDISNTVH*
Ga0114958_100083628F013525AGGMHDLSLKNPDQIKQELDSISEQMSEALYTFRRCEEFKKITFSQLTLTKKLEKNCSVSEAEKWAYSDKDYATIVEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTNRELSR*
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