Scaffold Ga0105252

Basic Information
Taxon OID	3300009678 Open in IMG/M
Scaffold ID	Ga0105252_10000174 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009678 Open in IMG/M

Scaffold ID

Ga0105252_10000174 Open in IMG/M

Source Dataset Name

Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50636
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (80.77%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

50636

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (80.77%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8898	Long. (^o)	-106.9077	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8898

Long. (^o)

-106.9077

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003590	Metagenome / Metatranscriptome	478	Y
F005136	Metagenome / Metatranscriptome	411	Y
F008250	Metagenome	336	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105252_1000017435	F005136	AGGAG	MGTKFKEVNTLSFIGNIGPKTERVLKEVDEEVDIIGCKDKFDRPCQLIAPLKLLVKDILGDGDTKQIPIFVNDDVQIELMHCRSSKGADGRRPAGFCETQIQVQYRRVTKTSEGDFELAEGDVLVVPQSVSHENSGDGPTTRLVVYTRNPVQIAHTYPVKESVVPNKQCTLLKPTTVLDKVEEGGSGGKHFELVENADIMIEPTHRSDAQRIYHRGFGQDEVAFQLSGRRATLTNQGEYILDTGDFLLIPPGTSHRNIGDMATIRIILYTRKPVRLADEYIERAKRAESPILS*
Ga0105252_1000017438	F008250	N/A	VRIEATDLDQARAWYDNTFGLIVGEQVSGEDQLTMIVPKSYQFVILRKVDKVADRSTQCYKGPHIDLRSDEASYPEMLKRFNRKESYWGPDPNLIPWHEPDANTAYGYDPFGNRIQIGVITKRPMHHGDVARFRRQES*
Ga0105252_1000017439	F003590	N/A	MKPYHIDFEGNAGLLARDYAKFPNQVLWKLAEKVREVVASGKVVRIVDDIGTDLSATYDGKRLYGMQFRAGDPPGRCHFPWGRCGVFNGEGNSNGDVFLSCVRGVAGRLAESMRWKVKDNIITEVDGGGEVGEECKRLFKEVPESNRLIEIMFGYHPKASAAHVIADPMHWELISKMPWAGLGTPRKHPKFRHMDASVFNARLYIDDRLVVDKHGMLDRSLLHHPDELEAAAEFGDPYQVLAPVSHAAHGSNTAW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105252_10000174

Overview

Ecosystem & Geography

Associated Families

Sequences