NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116149_1186670

Scaffold Ga0116149_1186670


Overview

Basic Information
Taxon OID3300009675 Open in IMG/M
Scaffold IDGa0116149_1186670 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)963
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037746Metagenome / Metatranscriptome167N
F074119Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0116149_11866701F037746GGAGGMAKVNIEDAIANDTVGHEFEANYISGTTDKELELSRKLMSKLLNKYGSRSALEADEQDWAKYKEASYVVYSRSKDRMDAAIKAREELIKRKNLLSKFFEENPEILFGLSEWQRINLRKYTDYGLLFDQEYLWDLLKELGKDGTIAHLANVANYIYNDTGFLGGVREDYDALRRGEVRS
Ga0116149_11866702F074119GAGGMSDIQVFEVLAKILPYLLSLGIGTFAGWELVKTKIHELAEFFKTVDEALYDDAVTEKEFRAIWEKGRSLFELGPIQEKGEV*
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