NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116148_1007991

Scaffold Ga0116148_1007991


Overview

Basic Information
Taxon OID3300009669 Open in IMG/M
Scaffold IDGa0116148_1007991 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8256
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045053Metagenome / Metatranscriptome153N
F052500Metagenome142N
F091215Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0116148_100799110F091215AGGMGPTADETIRFYREDGAYVLVHDGTLDGGSNLHYVIRLIEREMRLKLKSLGYFGQGTHSQERFRSGQPIDEHAFARRTRQLLRLPLAELAACLMAKGVLGPKPGEPAFGDLNEKTGAAALKEWAISYYEANEITCPGSRNTLERNRLFRWRRIPFENLRHNLQGSYEIPVKVECYRQLLGKGHPLPPLICRRRGWDLLEGYHRLSAHEKVGSETIPCVIIGRS*
Ga0116148_10079917F052500N/AMTTQAQRHRASEIAGEITKLQGIKSAVVDDDNGYGSFNLFIELRNRLEGHYHLSRRIEFEIPLHGLMARITRIIKRHGARLEWHEPPRRQYARPGHGKKLFEGYSTDSYKVSVHIPQPAEEVQRHRETQLAFA*
Ga0116148_10079919F045053N/AMTTVASYHIPGFGTVDVVQQNDGRNRFWDLFAASGECLNEGHPFWSKPRRKQVETFLAHDLKEALARIEKECERLQITQEDLDEVIHEAAQASNRRLNQVSEEKQQERLITTAEEQAARVNNAGRTSQLIYLLEAYGEAGAVKALQERHGTNG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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