NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116147_1041515

Scaffold Ga0116147_1041515


Overview

Basic Information
Taxon OID3300009667 Open in IMG/M
Scaffold IDGa0116147_1041515 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2294
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)34.72Long. (o)135.27Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053881Metagenome / Metatranscriptome140N
F070633Metagenome / Metatranscriptome123N
F074119Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0116147_10415152F053881N/AMTGLLKISKESLGEKERKLYSKLYKHIIESFEIDELAADQISLALVCQKCILLPRLLSGEDVDINQVSESIRKWLSEYRLTPKSREKEKEVTINLSAIIEEIHRERENPN*
Ga0116147_10415153F070633N/ALGGRDTGLRDRAKNRLVLDVSHSQGDEGFVYSVRQHLPLGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG*
Ga0116147_10415157F074119N/AYLVSLGIGAFAGWELVKTKIHELAEFFKTVDEALYDDAVTEKEFRAIWEKGRALFQWSFAEKKGEL*
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