Scaffold Ga0116167_1094774

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116167_1094774

Scaffold Ga0116167_1094774

Overview

Basic Information
Taxon OID	3300009654 Open in IMG/M
Scaffold ID	Ga0116167_1094774 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1108
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin028	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	36.29	Long. (^o)	139.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022893	Metagenome / Metatranscriptome	212	N
F023320	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116167_10947741	F023320	N/A	MKQYKALTMEVDLSGLGTEQWIQAELDYDEIAQKIIDTLIEVMREKDVEASSNLIQSLEPETKSGEIVIYADYYWKFIDKGVNGLRQSRDSEFSFKFVPASKKHALSIAKWLEFRGFATE
Ga0116167_10947743	F022893	N/A	LLCSYDKTDVDGFINLLSKCTEVDKEIFYNLKFADLIRFYKELIDSVDKEKDKAPKHTIKVGDRYYKLIDLLNLPVAFIIDFDLVEQTPSYLLALCYTETGSYTDERNTIVDEREKVMQNADIIDYMRLATFFLNWNNFLQKIKEKSKKNTLNLKK*

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