Scaffold Ga0105347

Basic Information
Taxon OID	3300009609 Open in IMG/M
Scaffold ID	Ga0105347_1001390 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009609 Open in IMG/M

Scaffold ID

Ga0105347_1001390 Open in IMG/M

Source Dataset Name

Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10436
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10436

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9223	Long. (^o)	-106.9517	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9223

Long. (^o)

-106.9517

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F006450	Metagenome	373	Y
F011880	Metagenome / Metatranscriptome	286	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0105347_10013902	F011880	AGGAGG	MFRRPETKATEEKVYKQERIGEFMTTWKDFPRPGLAAWAERKKAGLMGTAKSTYYTPRFRPFDMLSLPHQSLVILENDNHRIGVESVAGTQDSFHRYVDCDMVYFQFCGNSTVETEFGIYELEPGEVLLVPGGISHRSTGRNDSLRYFCRSHEAVDYVMGEDQYTSQSSFVVKRIGGPDWTAAQNAQPPSKGQVMEKMHFWDDGPEDQTLVERDYESLVGVAGLRRGEPGSAVRKLRAFDHFTAIVGKGREDAGTQPLMESANMRIRTYNMQDEQFAFHRALRSEEVRIQFRGDALDMSEFENVEVSPGEVTIIPLGISHSVISIPPEDESFLRLNFYSKLRWRVAIDPTKHFFDSKFEIATTVHKQAEWRKKRAAAG*
Ga0105347_10013903	F004237	AGGAGG	MTTTYPIADMMIGVRNMIEAADLRRGDQVLLLADTRSDKLTLEALSAGLRFFGAEPMTLVTEPIARYGAVPQQVLEAMRASDVVIWVWPVFITFTPAHRAMGRKREESGTQLHENRMKPYHIYFEGNAGLLARDYAKFPNKVLWKLAEKVREVVAAGKVVRMEDSLGTSLTATYDGKRLYGMQFRAGDPPGRCHFPWGRCGVFNGDGEANGEVYLSCVQGVAGMLREPMRWKVKDSLITEVDGGGEIGEECKRLFKEVPESNRLIEIMFGYHPKASAEYGIADPLHWELISKMPWAGLGTPRKHPKFRHMDGSVFNARLYIDDRLVVDRHGMLDRSLLHHPEVLEAAAEFGDPYTVLAPVSHEAHGSGTLW*
Ga0105347_10013905	F006450	GGAG	MQNEPIAVSLERIDHGVLPSNDLGRAFRFWSSFMGVRLGFHANINARGLNREVPMIVFFTVANHPGFGLALQDFRLSPTPARKLEGVVWGFEVAADDLSAAADEAEKRKLRWERVAYHPASSPIKESLFVLDPDGNTLDLCIRREPSDAAPQPGAVPLRRISHVRIEATDLDLARAWYKNTFGMVEAQQVPGEEQLTLTVPRSGQLLVVRKVAQVAERSTQCFRGPHIDLRAGEESYPAILKRFDRKETYWGPDPDLIPWHEPDSNTAYGYDPFGNRIQIGVIATRPMHFGEVARFANRTHV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105347_1001390

Overview

Ecosystem & Geography

Associated Families

Sequences