NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115102_10225984

Scaffold Ga0115102_10225984


Overview

Basic Information
Taxon OID3300009606 Open in IMG/M
Scaffold IDGa0115102_10225984 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4796
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.6953Long. (o)-122.3565Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007892Metagenome / Metatranscriptome343Y
F037230Metagenome / Metatranscriptome168Y
F061271Metagenome / Metatranscriptome132N
F076593Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0115102_1022598414F076593N/AMSLTEHQKNELNTVADSIAYYIEDHLRETISWQMPDSLVIDMQEEQFMDAMGYAYNKVLQLITE*
Ga0115102_1022598415F007892N/AMGRLIEISPQQDVVNKINAKADFTHNINQTRLERYTVSIKNVFTGKNPSLFLKDTWKVVDDAFNSDQELLGGWLSEDDIYFLDYGLSVTDLKKAMKIAKFNKQL
Ga0115102_102259845F037230N/AMKNLTEEYVNIDWMGICSNFDLEHGDISPEQSFEIDRALGNINEVIHAFIDQNKTKTMKTTAIPALTLTNTEYNVLAVALDHMYEHLNDLAGDFNTFEEENINLKRIVDVQSLKEMFNL*
Ga0115102_102259849F061271N/AMQELDKVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFAYENGNVPEHCFINSCMWAYHAAISEYEHNNCKIGNATKCYKKQCCR*
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