NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10074381

Scaffold Ga0115013_10074381


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10074381 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1897
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012114Metagenome283Y
F018906Metagenome232Y
F040582Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0115013_100743815F040582GGAGGMGIISMDFQSVVIGYAIGIALMWSLNETLYGDNNEQRTETDSERTRPRYDRRYHMLYGDSPE*
Ga0115013_100743817F012114AGGAGGMSNNNCMMPEVRKNVWVVYDTQGNRIGEVGAMTEIEARQKVALHVMIPFRLSHVEE*
Ga0115013_100743818F018906GAGGMKTCKVNPLKLNETRFEAETHKKEGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILKYPLGTDGEITAELIYDTQINKDLGCVDVIGWRDFGEVADILQQIRNYNTGEYMINE*
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