NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116137_1002123

Scaffold Ga0116137_1002123


Overview

Basic Information
Taxon OID3300009549 Open in IMG/M
Scaffold IDGa0116137_1002123 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12116
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018396Metagenome / Metatranscriptome235Y
F023632Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0116137_10021234F023632GGAMAPARRWRQDVDRIGETDRSGGLGTAVIPSEARPFEGLREPTPSPCRWPTLAITDRAMRDVDAALAADPLFHRCPDGHEGQVDVRYWYFHPLNLSCRHCAEGGGVRVVDPETVLCRHRMARRPGEPVPER*
Ga0116137_10021239F018396GGALQALLTQICRQETALACHLAERARALRFAPDRLSLEGVAERDRQNAHALAHEIGCETTLAAAASPARRPGTLTATKLIQDLEETENLYALYRQAGRLTSDEILRGRLDEFAAEEARGSQTIRGILARMDSYVTDLP*
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