NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115099_10539164

Scaffold Ga0115099_10539164


Overview

Basic Information
Taxon OID3300009543 Open in IMG/M
Scaffold IDGa0115099_10539164 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2414
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.6882Long. (o)-122.386Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004461Metagenome / Metatranscriptome437Y
F027314Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0115099_105391642F004461N/AMSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGNSAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDADFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTDAVLTSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA*
Ga0115099_105391643F027314N/AMACNVTLADISYSCDDVAIGGIVELHVANRSDALTALTRTDADREVTAATAVTGISQISFNNKDGFSVFSEVKTVAADGIVSTVPTVSVELPKMTADKITKLNDISKGGAELVAFVETAAGTYHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDELGLSYSIGAAEFATATA*
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