| Basic Information | |
|---|---|
| Taxon OID | 3300009529 Open in IMG/M |
| Scaffold ID | Ga0114919_10011521 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6889 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: Black Sea | |||||||
| Coordinates | Lat. (o) | 44.288 | Long. (o) | 34.983 | Alt. (m) | Depth (m) | 2075 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001668 | Metagenome / Metatranscriptome | 654 | Y |
| F009856 | Metagenome / Metatranscriptome | 312 | Y |
| F015079 | Metagenome | 257 | Y |
| F024541 | Metagenome / Metatranscriptome | 205 | N |
| F048956 | Metagenome / Metatranscriptome | 147 | N |
| F057327 | Metagenome / Metatranscriptome | 136 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114919_1001152110 | F024541 | N/A | MEFFEMINSQYGSVQACAKKLGTNKDQLLRQIKTGDSRVLDAIADNCRLSRMEVRWEFRYHKENT* |
| Ga0114919_1001152115 | F015079 | AGG | MYTFEIAFADGTVGEANSKTAEPPYKVGDEVYYEVVSNNERWGKKLKISKNPPIPGGFPAPNPQKDKQIIRGMCLKLAGMAWANQYKHKEFATPHEVLVKDVIMLAKKYEAAFNDWMNEP |
| Ga0114919_1001152116 | F057327 | GGA | MNLDITHEERVARIMFLQEFRRNLYKGRAEKELNNRQVLQYDREIRQVKYALRKLDPDGIFP* |
| Ga0114919_1001152117 | F009856 | N/A | MKYWFETEDAERFGLVAASVLAHLKYWIDRNTSAGEEPCMTQGMKEMNQYLPFLTVPQIKTALKKLEAAGAIYRQPNGFDRRHTYCLGTESSYRRDENVSSKGANCPIEGTELSHVHIETNTSKRTRESAREDLEYQRPTEEQVVEYLVDIGGADLAPNLGPAFFNYYEANGWMVNGTPIAKWKPKARQWLTNERNRQSNERRKGFNPKGFTPDGLKDFIANG* |
| Ga0114919_1001152121 | F048956 | GGA | MTLDGYLARNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKDETIDGLLERKQLKYWVLRVMVNNYNSKTSRYHYKWRKDLERRRKFAHHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEDG |
| Ga0114919_100115213 | F001668 | AGGA | MATVYLPVEATIPGMDSAERAEAIDREVWRLRRPLSVQSPQDITQFYYPRITHPTTGQVAIVGQTDEQVRIHPDVDLTDLLALLPEVPQAEKDGLVMFIDMNRGGTVPFGQLIPSTSTQLTEVEAEAEGWFPDDPL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |