Scaffold Ga0115004_10083653

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0115004_10083653

Scaffold Ga0115004_10083653

Overview

Basic Information
Taxon OID	3300009526 Open in IMG/M
Scaffold ID	Ga0115004_10083653 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1978
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F012510	Metagenome	280	Y
F076495	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115004_100836532	F012510	AGCAGG	MKTFKQHLNELYKDYPGKGWVKGTKDAPKNINPKDVVWRSKIHHYDDTVRSDDTRLIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDDAKKFASIRKWQEKK*
Ga0115004_100836533	F076495	N/A	MARKKMKTFKEFVKFQKVTVKDKSGKSHTQQTRIRPDTTHVAIMHYGAIAGTNLATAVKANTSLNFGTEKSLDKVISHAKKKFNLKTVEIQKLDKKYL*
Ga0115004_100836537	F000659	GAG	MKTFSQYLEEANSKYIVSKNPSDKKWYVMGHVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISNES*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.