NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116128_1000036

Scaffold Ga0116128_1000036


Overview

Basic Information
Taxon OID3300009518 Open in IMG/M
Scaffold IDGa0116128_1000036 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113378
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (67.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1.5 to 1.75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002273Metagenome / Metatranscriptome576Y
F003042Metagenome / Metatranscriptome511Y
F068371Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0116128_100003637F068371GGAGMPESVHLPGYRWLMFLRNVPVRVGIYTGICLSLVFGMWLVLANRVPLLERLAPERKVVAGFCLVLLACLPVLKFYRSPGDLLVSGLLAWTLFSITYRLLCMVFVLLDARYSAFHVFVLGALVYLICATLSWIGTIIWRVRAADISHLHH*
Ga0116128_100003653F002273AGGAGMDGSVIGLVAVVLTCGIPLAVIYAFYRVRKLRTEERLAALARGAAIPMEPELSQYAKSRRAGILLVTGGLGFMTMFAVIARVVGEPETLVAAAFGILPLAVGIGYFLDAAMIRRDLKAS*
Ga0116128_100003668F003042N/AVKPNSKFASADLAVLLAQRLAETLLRERIVPRFVDSYVVEHGRFGLQVHAALYRDLLTLLQREALLAMSARALEIVEAVAGSDGAKVPVRTRRKFAAAFQQKYLAALTRQQGWNAGDALEFQADLQMYQAILAKTGPTRRARKPFEVANHPFVDRCAFLLDSSFLEKARVAASRSLTSLETLTTEVTEGILQVSSDARTPTTR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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