| Basic Information | |
|---|---|
| Taxon OID | 3300009502 Open in IMG/M |
| Scaffold ID | Ga0114951_10190104 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1106 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Lake Alinen Mustajarvi | |||||||
| Coordinates | Lat. (o) | 61.2 | Long. (o) | 25.1 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029327 | Metagenome | 188 | Y |
| F037029 | Metagenome | 168 | Y |
| F050111 | Metagenome | 145 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114951_101901042 | F037029 | GGAG | MKHSFRMWCQEKWFEHKDELEAYQQPLPYTAREYFNRYKFWLKREYKHQQHLSK* |
| Ga0114951_101901043 | F050111 | GAGG | MDYKKLYNIRMTMSPKDIMTFVSGLHDVQMDMIETVVMRKEREGFPEASAVIRHIMELK* |
| Ga0114951_101901044 | F029327 | N/A | CGGLWGDGVMGFYKNIEIEIMEWQARGRSVEDTYIYFKDYVTHEDVVRIFARDCDEATV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |