Basic Information | |
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Taxon OID | 3300009502 Open in IMG/M |
Scaffold ID | Ga0114951_10153732 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1264 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Finland: Lake Alinen Mustajarvi | |||||||
Coordinates | Lat. (o) | 61.2 | Long. (o) | 25.1 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015302 | Metagenome | 255 | Y |
F030333 | Metagenome | 185 | Y |
F034448 | Metagenome | 174 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114951_101537321 | F015302 | N/A | ADTAARLDTIIGGDTQHFLRLQRVKNEYDELARAVPVGQGFLTFYDYVKEYYGVKLQFDGDNVSLAYSVVDEKKHLMFLLKFNR* |
Ga0114951_101537322 | F034448 | N/A | MHVNNYTLPRPPEQALNQCHAVYINDPAFRMWAMKKWCREQNLSLMWSELVETSDVSAYFDEAAAFWFIDPADATLFRLKFK* |
Ga0114951_101537323 | F030333 | N/A | MAIDRNPHLTIPVKTYTHYTECEPWCLANIGEWNIAWWKDFPDIAMSVVVEGPHEDCYWFATERDALMFRLKFK* |
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