NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115570_10051099

Scaffold Ga0115570_10051099


Overview

Basic Information
Taxon OID3300009496 Open in IMG/M
Scaffold IDGa0115570_10051099 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2199
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097115Metagenome / Metatranscriptome104N
F100396Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0115570_100510991F097115N/AMETIYIILGIVSTISIFLLGYLLNVIFNLKKQVDYLESYLEDTDARIDIVVSKNAQQLKEQLDVLEERVTEDNRDIKSLLDSRLDKLEYKFRADVTSGTEVIKVIEESKKSNERLDEFIRTFQA
Ga0115570_100510995F100396N/AYIKGHPYNKPWSFTEKYFDKPKHISSIIHSSKLNQFCIFHPYVMRTKSILGVLDKITMTSNFVDDLEFLGSLDNLGLRYSSLKRVLTYVRKHDEGSITEDGKKINGVNLWDDILRVRDKVDFLRPNGLEFKSNVIKIKVPYNYNTQIDSEMKDTFTNLLSNIDNILKPKPTFKDKFDWRRF*
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