NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114932_10015810

Scaffold Ga0114932_10015810


Overview

Basic Information
Taxon OID3300009481 Open in IMG/M
Scaffold IDGa0114932_10015810 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5405
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y
F060436Metagenome133N
F064207Metagenome129Y
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114932_1001581010F064207GGAGMQFNDREKLILDFLKDNNVDIEEVIDAIIKANGFVGVGLVRLQDILIDAVKKHFKQESLDKIMNG*
Ga0114932_1001581012F060436AGGAGMTRYNEINIKHFANLVQEIDVSKYTQEEYREIVEEIYMAIFRHNTKGEYVIETMPNDKTNWKVYKPTQTKEETLLIINGGKKDE*
Ga0114932_100158102F029779AGGAGMTYKEKYEQLMESLVGDNAIERYTQEDILSYVYNLKNIEEKFYDNKK*
Ga0114932_100158103F012581AGGAGMAKFTIYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFESSGEEFYITSIEENEDNDV*
Ga0114932_100158105F013187AGGAGMTTKAKKKIKKKPKITWGWIYGDECPELWEHFGFPYPDPDDRMKLKFVKYESKEMQRG*
Ga0114932_100158108F105336GAGGMKLRPVQLNKIEQILSDLERKVEEMEQQDYMTFDLSKDLQNISYMLDILREEIESK*
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