Scaffold Ga0126448_1002640

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126448_1002640

Scaffold Ga0126448_1002640

Overview

Basic Information
Taxon OID	3300009466 Open in IMG/M
Scaffold ID	Ga0126448_1002640 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4996
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location Name	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001781	Metagenome / Metatranscriptome	635	Y
F002935	Metagenome	519	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126448_100264012	F002935	AGGA	MRERSKGYIGQIVDGKKLATIANDIYRLQYSNEFSECKVDNLLFVTLEEKNSFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQGGYYNGRVFISVETVKECLTDQTEDISDYIRSFGDRLDNNCFLWQSKMSEVDSMIEA*
Ga0126448_10026405	F001781	GAGG	MRPEDKDKLNQCLDILDTTDLGLSMVWLWTWSTIGNILGDESYHPQVSLDEMWEPLTKSVSQGKGFSLEYGAEQHQEEVLEWMLEQGYILDPVFEDDEDDD*

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