NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115559_1011093

Scaffold Ga0115559_1011093


Overview

Basic Information
Taxon OID3300009438 Open in IMG/M
Scaffold IDGa0115559_1011093 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110506
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4878
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006685Metagenome367N
F071009Metagenome122N
F086945Metagenome110N
F090089Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0115559_10110931F006685AGAAGGMTEEKKTKGKAWRMREWGRAQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVEDFIDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLDLLAMDDRSKAMKLKQFYDYEEERFTLWDSKCKAGLGAWLLEEIRIETGLWVVDFATGRQKGHKAERIVRATNEFTDWVSRFDSWKETTRVFKMALPEEPVDWYGLVGGGYSVKHMPPQKLFTGKPVANFKPYESSYQHAMSALNKLQKVSWKINKEILDITLKCWENKRVIGNIPNFGEIDEQPR
Ga0115559_10110932F086945N/AMSKFDINEEITDCPFDWSGIDHRAIADGWYHFWGNTQITSFETDKKGRYVRDEDGKLIAHRTKIPRKLPRTWFNKQQEGQEY*
Ga0115559_10110935F071009N/AMTTDPENLPSLDDESLQALIQHYLSLKQRLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ*
Ga0115559_10110936F090089N/AMSVTYYLTDHNGNQIAFFYRVDNERYSTCPNILWACRQYPQFQGTASSKGEAIEAFKQTLKEIKKLSVPVRSSKKCTDCDISLQGMENESNVCDECNPLTEDL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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