NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115008_10000214

Scaffold Ga0115008_10000214


Overview

Basic Information
Taxon OID3300009436 Open in IMG/M
Scaffold IDGa0115008_10000214 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39903
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (43.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)69.2303Long. (o)7.7302Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017670Metagenome / Metatranscriptome239Y
F020440Metagenome / Metatranscriptome224Y
F052603Metagenome / Metatranscriptome142Y
F058994Metagenome / Metatranscriptome134Y
F072517Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0115008_1000021411F052603N/AVAFYNTHLRKTSDPTPITKSKMERGMVVKVKYKAQGKTPKLYLILVLQPKWPNSTEGKLHGLSLDNIPPQKFLEFAKVYKEVISESSKVKKLDLAKIQITEASKVFYTSEIKTSKQLKSSYRTFNLLDIQSIQSVNYDWGKFDKVAARDERRKKIEEEARERRDNNDVTN*
Ga0115008_1000021421F017670N/AMYYILLPDDTEEGVQYSTNVLGESSFKNFWAEQGFEILERLVNKYPDTLNEVKIKDEKSKEYTVEEFLKNISKLNLIK*
Ga0115008_1000021430F020440N/AMNNIRQYGWKDWIRNPQNKSLYEKDMNEGLRQFKMEQLRRDRAAQAAVFKQRGL*
Ga0115008_1000021435F072517N/AVESVKGWIVYVMDVNGRPLKAEICELDELVPTITKLESVFNI*
Ga0115008_1000021451F058994N/AMKSVNDVYNSVWNQQLVLLKVIKNTIYSSGNLKGIPQWRDRKRFYQLEQKYSAGNYLLSKKDFQFLESLYFKYKV*
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