NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115545_1010256

Scaffold Ga0115545_1010256


Overview

Basic Information
Taxon OID3300009433 Open in IMG/M
Scaffold IDGa0115545_1010256 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4126
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017486Metagenome / Metatranscriptome240N
F055202Metagenome / Metatranscriptome139Y
F060810Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0115545_10102561F055202N/ARSSIMTRRQAKQIRRQVKAILIQVSLGLAAGLIIGAVLALNL*
Ga0115545_101025611F017486AGGAMNKIIITNAHAHGFAFACDTETQGQVFIPVHIADGFDLAPGDEINAVLVPNYQDKSDKGTPWQAVKLQRPNEIVQITSMEHLNEWYEGLSEAPEDEVCEKAIIDNSQTLNNEALDANLLDFILAAGGYHTTAELADYFELDHKTAGNA
Ga0115545_10102568F060810GGAGGMSIRVGLPDVTFNALCRITEIDREFIGSPDYMGVAQFWSWSHPQKTRLSRASVSARRKIHHALVIDGLDLDGDTGIHRSIISIVLDKEEQGL*
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